Version 140 — Jan 6, 11:59am — refactor: use @/* path alias pattern

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What changed

changed biome.json
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changed src/config/loader.ts
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changed src/config/schema.ts
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changed src/index.ts
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changed src/session/server.ts
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changed src/state/types.ts
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changed src/tools/branch.ts
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changed src/tools/index.ts
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changed src/tools/probe-logic.ts
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changed src/tools/push-question.ts
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changed src/tools/questions.ts
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changed src/tools/responses.ts
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changed src/tools/session.ts
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changed tsconfig.json
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